Tuesday, 14 July 2015

Differentail Gene Expression of Kallisto

Cited from Sleuth companion tool

Import abundance.txt files into an R matrix or list or Bioconductor SummarizedExperiment, follow read kallisto RNA-seq quantification into R / Bioconductor data structures

Analysis using Limma, follow How to run kallisto on NCBI SRA RNA-Seq data for differential expression using the mac terminal

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