SCDE: Q&A

Cited from Definition of columns of scde diff DE matrix

These should provide estimates of the limma values.

logFC == mle

P.value == pnorm(Z)

adj.P.val == pnorm(cZ)

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Cited from Normalized read counts

scde.expression.magnitude returns FPM (not normalized by transcript length).

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p.self.fail=scde.failure.probability(models=o.ifm,counts=cd)