Hox Gene Cluster

Cited from Genetic Signaling: Transcription Factor Cascades and Segmentation

Developmental Biology: Inset Anatomy

Insect Anatomy

ChIP-seq Tutorial

Computational Pipeline for ChIP-Seq Data Analysis

Functional annotation of ChIP-peaks

Perl Pod::Usage Module

Plain Old Documentation in 5 minutes

Perl Program Anatomy

Perldoc Pod::Usage

Debugging: pdb Module in Python

Debugging in Python

Python: Logging

Stop Using "print" for Debugging: A 5 Minute Quickstart Guide to Python’s logging Module

Python 101: An Intro to logging

Irreproducible discovery rate (IDR)

Chip-seq data analysis: from quality check to motif discovery and more

homer-idr

Irreproducible Discovery Rate (IDR) in Python3

Bash: -depth

-depth Process each directory’s contents before the directory itself.

Recursively Renaming Directories

Recursively rename directories in bash

Bash: shopt -s globstar

Cited from The Shopt Builtin

shopt: change shell optional behaviour.

-s set the specified option.
-u disable the specified option.

option:

globstar

"If set, the pattern ‘**’ used in a filename expansion context will match all files and zero or more directories and subdirectories. If the pattern is followed by a ‘/’, only directories and subdirectories match."

Makefile: Defining Custom Suffix Rules

Defining Custom Suffix Rules in Makefile

Makefile Cheatsheet

Make Notes

Makefile Cookbook

Make for Dummies

R Data.Table Package Cheat Sheet

Data Analysis the data.tabe Way

Advanced tips and tricks with data.table

Python: Use Variable as a Regular Expression Pattern

variable inside python regex

RNA-seq: Expression Units

What the FPKM? A review of RNA-Seq expression units