Sunday 25 December 2016

Vi Editor: Exit ^X Mode

Ctrl+q

Thursday 22 December 2016

Modifiy Python matplotlib Backend Settings

To find the location of configuration file:
>>> import matplotlib
>>> matplotlib.matplotlib_fname()

Edit the matplotlib configuration file:
Modify "backend : tkagg" to "backend : Agg", for example.

More of Customizing matplotlib.



Friday 16 December 2016

Detecting hierarchical 3 - D genome domain reconfiguration with network modularity

Detecting hierarchical 3 - D genome domain reconfiguration with network modularity

Impact of regulatory variation across human iPSCs and differentiated cells

Impact of regulatory variation across human iPSCs and differentiated cells

Zynda et al. SOFTWARE Repliscan: a tool for classifying replication timing regions

Zynda et al. SOFTWARE Repliscan: a tool for classifying replication timing regions

Mixture modeling of single-cell RNA-seq data to indentify genes with differential distributions

Mixture modeling of single-cell RNA-seq data to indentify genes with differential distributions

CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells

CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells

dbSUPER: a database of super-enhancers in mouse and human genome

dbSUPER: a database of super-enhancers in mouse and human genome

Tuesday 6 December 2016

Bash Sponge Command

Combining many files columnwise, use first column only once

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Cited from Can bash wildcards specify negative matches?

If the extglob shell option is enabled using the shopt builtin, several
extended pattern matching operators are recognized. In the following 
description, a pattern-list is a list of one or more patterns separated 
by a |.  Composite patterns may be formed using one or more of the following
sub-patterns:

          ?(pattern-list)
                 Matches zero or one occurrence of the given patterns
          *(pattern-list)
                 Matches zero or more occurrences of the given patterns
          +(pattern-list)
                 Matches one or more occurrences of the given patterns
          @(pattern-list)
                 Matches one of the given patterns
          !(pattern-list)
                 Matches anything except one of the given patterns