Hi-C Seq Protocol

Question: How to read Hi-C result from paper 'Bing Ren'

Chromosome Confirmation Capture

Interpreting 4C-Seq data: how far can we go?

Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data

Bivalent Promoters

A double take on bivalent promoters

Promoters in Mouse Embroynic Stem Cells

Genome-wide mapping and analysis of active promoters in mouse embryonic stem cells and adult organs

R ggplot2 Piechart

ggplot2 pie chart

R %>% (a.k.a: pipe) Operator

Cited from Simpler R coding with pipes > the present and future of the magrittr package

Python Pie Charts Recipe

Cited from Making nicer looking pie charts with matplotlib

Save Plot to Image File in Matplotlib

Cited from Save plot to image file instead of displaying it using Matplotlib

Set the labels size on a pie chart in python

Cited from How to set the labels size on a pie chart in python

import matplotlib as mpl
mpl.rcParams['font.size'] = 9.0

Axel and Prozilla

Linux ultra fast command line download accelerator

Parallel: Installation and Tutorial

Cited from http://git.savannah.gnu.org/cgit/parallel.git/tree/README

"Full installation of GNU Parallel is as simple as:
wget http://ftpmirror.gnu.org/parallel/parallel-20150922.tar.bz2 bzip2 -dc parallel-20150922.tar.bz2 | tar xvf - cd parallel-20150922 ./configure && make && sudo make install"

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Parallel Tutorial

Tool: Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them

Python: `if __name__ == “__main__”:`

What does `if __name__ == “__main__”:` do?