Usage of bowtie1:
http://cgrlucb.wikispaces.com/file/view/ChIPseq_workshop_spring2013.pdf/415628696/ChIPseq_workshop_spring2013.pdf
http://cgrlucb.wikispaces.com/file/view/ChIP-seq-analysis.pdf/263706166/ChIP-seq-analysis.pdf
http://www.epigenesys.eu/images/stories/protocols/pdf/20120529112503_p56.pdf
ChIP peak calling:
http://epigenie.com/guide-peak-calling-for-chip-seq/
Workflow of ChIP-seq analysis:
https://sites.google.com/site/princetonhtseq/tutorials/chip-seq
http://haemcode.stemcells.cam.ac.uk/doc_pipeline.php
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