Wednesday 22 August 2018

Nextflow SGE Executor Memory Specification

Cited from process memory

process my_process {
    memory {16.GB * task.attempt}                                                                                                                           
    clusterOptions "-l h_vmem=${memory.toString().replaceAll(/[\sB]/,'')}"
    ...
} 
 
Cited from Configuration

perJobMemLimit Specifies Platform LSF per-job memory limit mode

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